Identifiers.org
Documentation
Metadata Service
Identifiers.org metadata service enables users to extract Schema.org from landing pages of the original providers by passing in Compact Identifiers.
http://metadata.api.identifiers.org/{Compact Identifier}
For example:
http://metadata.api.identifiers.org/reactome:R-HSA-446203
Resources providing metadata
Following is a list of resources in the Identifiers.org registry providing metadata (last updated 2018-12-05)
| Prefix | Resource Information | Example Dataset URL | Dataset Metadata | Home URL | DataCatalog Metadata |
|---|---|---|---|---|---|
| ec-code | Enzyme nomenclature database, ExPASy (Expert Protein Analysis System) | https://enzyme.expasy.org/EC/1.1.1.1 | Yes | https://enzyme.expasy.org/ | Yes |
| reactome | Reactome, a curated knowledgebase of biological pathways | https://reactome.org/content/detail/R-HSA-201451 | Yes | https://www.reactome.org/ | Yes |
| prosite | ExPASy PROSITE | https://prosite.expasy.org/PS00001 | Yes | https://www.expasy.org/prosite/ | Yes |
| cath.domain | CATH domain at UCL | http://www.cathdb.info/domain/1cukA01 | Yes | http://www.cathdb.info/ | Yes |
| hamap | HAPMAP at Swiss Institute of Bioinformatics | https://hamap.expasy.org/unirule/MF_01400 | Yes | https://hamap.expasy.org/ | Yes |
| biosample | BioSamples Database at EBI | https://www.ebi.ac.uk/biosamples/sample/SAMEA2397676 | Yes | https://www.ebi.ac.uk/biosamples/ | Yes |
| fairsharing | FAIRSharing at University of Oxford | https://fairsharing.org/bsg-000052 | Yes | https://fairsharing.org/ | Yes |
| cellosaurus | Cellosaurus through SIB | http://web.expasy.org/cellosaurus/CVCL_0030 | Yes | http://web.expasy.org/cellosaurus/ | Yes |
| cosmic | COSMIC Gene at Sanger | http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=BRAF | Yes | http://cancer.sanger.ac.uk/cosmic/ | Yes |
| mobidb | MobiDB | http://mobidb.bio.unipd.it/P10636 | Yes | http://mobidb.bio.unipd.it | Yes |
| hpscreg | Human Pluripotent Stem Cell Registry | https://hpscreg.eu/cell-line/BCRTi001-A | Yes | https://hpscreg.eu/ | Yes |
| lei | Global LEI Index | https://www.gleif.org/lei/HWUPKR0MPOU8FGXBT394 | Yes | https://www.gleif.org/ | Yes |
| biomodels.db | BioModels through OmicsDI | https://www.omicsdi.org/dataset/biomodels/BIOMD0000000048 | Yes | https://www.omicsdi.org/ | No |
| pdb | Protein Databank in Europe (PDBe) | http://www.pdbe.org/2gc4 | Yes | http://www.pdbe.org/ | No |
| sgd | SGD through the Alliance of Genome Resources | https://www.alliancegenome.org/gene/SGD:S000003909 | Yes | https://www.alliancegenome.org | No |
| wb | WormBase through the Alliance of Genome Resources | https://www.alliancegenome.org/gene/WB:WBGene00000001 | Yes | https://www.alliancegenome.org | No |
| fb | FlyBase through the Alliance of Genome Resources | https://www.alliancegenome.org/gene/FB:FBgn0011293 | Yes | https://www.alliancegenome.org | No |
| arrayexpress | ArrayExpress through OmicsDI | https://www.omicsdi.org/dataset/arrayexpress-repository/E-MEXP-1712 | Yes | https://www.omicsdi.org/ | No |
| mgi | MGI through the Alliance of Genome Resources | https://www.alliancegenome.org/gene/MGI:2442292 | Yes | https://www.alliancegenome.org | No |
| rgd | RGD through the Alliance of Genome Resources | https://www.alliancegenome.org/gene/RGD:2018 | Yes | https://www.alliancegenome.org | No |
| zfin | ZFIN through the Alliance of Genome Resources | https://test.alliancegenome.org/gene/ZFIN:ZDB-GENE-041118-11 | Yes | https://www.alliancegenome.org | No |
| narcis | NARCIS at The Hague | http://www.narcis.nl/publication/RecordID/oai:cwi.nl:4725 | Yes | http://www.narcis.nl/?Language=en | No |
| gxa.expt | GXA Expt through OmicsDI | https://www.omicsdi.org/dataset/atlas-experiments/E-MTAB-2037 | Yes | https://www.omicsdi.org/ | No |
| metabolights | MataboLights through OmicsDI | https://www.omicsdi.org/dataset/metabolights_dataset/MTBLS1 | Yes | https://www.omicsdi.org/ | No |
| rgd.qtl | Rat Genome Database qTL at Medical College of Wisconsin | http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=1354581 | Yes | http://rgd.mcw.edu/ | No |
| rgd.strain | Rat Genome Database strain at Medical College of Wisconsin | http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=5688061 | Yes | http://rgd.mcw.edu/ | No |
| ega.study | EGA Study through OmicsDI | https://www.omicsdi.org/dataset/ega/EGAS00000000001 | Yes | https://www.omicsdi.org/ | No |
| ega.dataset | EGA Dataset through OmicsDI | https://www.omicsdi.org/dataset/ega/EGAD00000000001 | Yes | https://www.omicsdi.org/ | No |
| pride.project | PRIDE Project through OmicsDI | https://www.omicsdi.org/dataset/pride/PXD000440 | Yes | https://www.omicsdi.org/ | No |
| lincs.data | Lincs through OmicsDI | https://www.omicsdi.org/dataset/lincs/LDS-1110 | Yes | https://www.omicsdi.org/ | No |
| mw.study | Metabolomics Workbench Study through OmicsDI | https://www.omicsdi.org/dataset/metabolomics_workbench/ST000900 | Yes | https://www.omicsdi.org/ | No |
| mex | Metabolome Express through OmicsDI | https://www.omicsdi.org/dataset/metabolome_express/MEX36 | Yes | https://www.omicsdi.org/ | No |
| gpmdb | GPMDB through OmicsDI | https://www.omicsdi.org/dataset/gpmdb/GPM32310002988 | Yes | https://www.omicsdi.org/ | No |
| kaggle | Kaggle | https://www.kaggle.com/nasa/kepler-exoplanet-search-results | Yes | https://kaggle.com | No |
